AlphaMissenseR
This is the released version of AlphaMissenseR; for the devel version, see AlphaMissenseR.
Accessing AlphaMissense Data Resources in R
Bioconductor version: Release (3.20)
The AlphaMissense publication
Author: Martin Morgan [aut, cre] , Tram Nguyen [aut] , Tyrone Lee [ctb], Nitesh Turaga [ctb], Chan Zuckerberg Initiative DAF CZF2019-002443 [fnd], NIH NCI ITCR U24CA180996 [fnd], NIH NCI IOTN U24CA232979 [fnd], NIH NCI ARTNet U24CA274159 [fnd]
Maintainer: Martin Morgan <mtmorgan.xyz at gmail.com>
citation("AlphaMissenseR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AlphaMissenseR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AlphaMissenseR")
A. Introduction | HTML | R Script |
B. AlphaFold Integration | HTML | R Script |
C. ClinVar Integration | HTML | R Script |
D. Benchmarking with ProteinGym | HTML | R Script |
E. Issues & Solutions | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, FunctionalGenomics, GenePrediction, ImmunoOncology, SNP, Software, StructuralPrediction, Transcriptomics, VariantAnnotation |
Version | 1.2.0 |
In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.3.0), dplyr |
Imports | rjsoncons (>= 1.0.1), DBI, duckdb (>= 0.9.1), rlang, curl, BiocFileCache, spdl, memoise, BiocBaseUtils, utils, stats, tools, methods, whisker, ggplot2 |
System Requirements | |
URL | https://mtmorgan.github.io/AlphaMissenseR/ |
Bug Reports | https://github.com/mtmorgan/AlphaMissenseR/issues |
See More
Suggests | BiocManager, BiocGenerics, GenomicRanges, GenomeInfoDb, AnnotationHub, ExperimentHub, ensembldb, httr, tidyr, r3dmol, bio3d, shiny, shiny.gosling, ggdist, gghalves, colorspace, knitr, rmarkdown, testthat (>= 3.0.0) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | AlphaMissenseR_1.2.0.tar.gz |
Windows Binary (x86_64) | AlphaMissenseR_1.2.0.zip |
macOS Binary (x86_64) | AlphaMissenseR_1.2.0.tgz |
macOS Binary (arm64) | AlphaMissenseR_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AlphaMissenseR |
Source Repository (Developer Access) | git clone [email protected]:packages/AlphaMissenseR |
Bioc Package Browser | https://code.bioconductor.org/browse/AlphaMissenseR/ |
Package Short Url | https://bioconductor.org/packages/AlphaMissenseR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.20 | Source Archive |