TabulaMurisSenisData

This is the development version of TabulaMurisSenisData; for the stable release version, see TabulaMurisSenisData.

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Bioconductor version: Development (3.21)

This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.

Author: Charlotte Soneson [aut, cre] (ORCID: ), Dania Machlab [aut] (ORCID: ), Federico Marini [aut] (ORCID: ), Stefania Astrologo [aut] (ORCID: )

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("TabulaMurisSenisData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TabulaMurisSenisData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TabulaMurisSenisData")

TabulaMurisSenisData	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, RNASeqData, SingleCellData
Version	1.13.0
License	MIT + file LICENSE
Depends
Imports	ExperimentHub, SingleCellExperiment, HDF5Array, SummarizedExperiment, gdata, AnnotationHub
System Requirements
URL	https://github.com/fmicompbio/TabulaMurisSenisData
Bug Reports	https://github.com/fmicompbio/TabulaMurisSenisData/issues

Suggests	ggplot2, testthat, knitr, rmarkdown, iSEE, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	SPOTlight
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TabulaMurisSenisData_1.13.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TabulaMurisSenisData
Source Repository (Developer Access)	git clone [email protected]:packages/TabulaMurisSenisData
Package Short Url	https://bioconductor.org/packages/TabulaMurisSenisData/
Package Downloads Report	Download Stats