CoSIAdata

This is the development version of CoSIAdata; for the stable release version, see CoSIAdata.

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Bioconductor version: Development (3.21)

Variance Stabilized Transformation of Read Counts derived from Bgee RNA-Seq Expression Data. Expression Data includes annotations and is across 6 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, and Caenorhabditis elegans) and across more than 132 tissues. The data is represented as a RData files and is available in ExperimentHub.

Author: Anisha Haldar [aut] (ORCID: ), Vishal H. Oza [aut] (ORCID: ), Amanda D. Clark [cre, aut] (ORCID: ), Nathaniel S. DeVoss [aut] (ORCID: ), Brittany N. Lasseigne [aut] (ORCID: )

Maintainer: Amanda D. Clark <amanda at freshairfamily.org>

Citation (from within R, enter citation("CoSIAdata")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CoSIAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoSIAdata")

CoSIAdata	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, OrganismData, PackageTypeData, RNASeqData, Rattus_norvegicus_Data, SequencingData, Tissue
Version	1.7.0
License	MIT + file LICENSE
Depends	R (>= 4.3.0), ExperimentHub(>= 2.6.0)
Imports
System Requirements
URL
Bug Reports	https://github.com/lasseignelab/CoSIAdata/issues

Suggests	BiocStyle(>= 2.26.0), utils (>= 4.3.0), AnnotationHub(>= 3.7.3), knitr (>= 1.42)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CoSIAdata_1.7.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CoSIAdata
Source Repository (Developer Access)	git clone [email protected]:packages/CoSIAdata
Package Short Url	https://bioconductor.org/packages/CoSIAdata/
Package Downloads Report	Download Stats