optimalFlow
This is the development version of optimalFlow; for the stable release version, see optimalFlow.
optimalFlow
Bioconductor version: Development (3.21)
Optimal-transport techniques applied to supervised flow cytometry gating.
Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>
Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>
Citation (from within R, enter
citation("optimalFlow")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("optimalFlow")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("optimalFlow")| optimalFlow: optimal-transport approach to Flow Cytometry analysis | HTML | R Script |
| Reference Manual |
Details
| biocViews | FlowCytometry, Software, Technology |
| Version | 1.19.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | Artistic-2.0 |
| Depends | dplyr, optimalFlowData, rlang (>= 0.4.0) |
| Imports | transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse |
| System Requirements | |
| URL |
See More
| Suggests | knitr, BiocStyle, rmarkdown, magick |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | optimalFlow_1.19.0.tar.gz |
| Windows Binary (x86_64) | optimalFlow_1.19.0.zip |
| macOS Binary (x86_64) | optimalFlow_1.19.0.tgz |
| macOS Binary (arm64) | optimalFlow_1.19.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/optimalFlow |
| Source Repository (Developer Access) | git clone [email protected]:packages/optimalFlow |
| Bioc Package Browser | https://code.bioconductor.org/browse/optimalFlow/ |
| Package Short Url | https://bioconductor.org/packages/optimalFlow/ |
| Package Downloads Report | Download Stats |